Quality Check ToolBox V1.0
Contributor: Agnik Misra
Problem: There is currently no standalone, open source Python library within the OSIPI ecosystem for post-processing quality control (QC) of Arterial...
Science and medicine
Open Science Initiative for Perfusion Imaging
Open access resources for perfusion imaging
Technologies
githubPython
Topics
artificial intelligencedatamedical imagingreproducible science
- Total projects
- 14
- Years participating
- 3
- Most recent
- 2026
Participation history
Historical projects
A User Repository of Artifacts for Perfusion Imaging (AURA) Platform
Contributor: Md. Sahil
This project aims to transform AURA (A User Repository of Artifacts) from a survey-based collection of perfusion imaging artifacts into an...
Standardized Python Pipeline for Evaluating Perfusion Imaging Challenge
Contributor: Ranya
This project will develop a standardized Python pipeline to evaluate submissions to OSIPI perfusion imaging challenges for ASL and DSC DCE MRI...
PyASL: GUI, preclinical functionalities and batch mode
Contributor: tech0priyanshu
In previous roadmaps, we collected code to create PyASL, a Python library to preprocess ASL data (both preclinical and human brain data). PyASL not...
Strengthening pyaslreport reliability through automated testing and CI
Contributor: Vitor Lima Santos
The pyaslreport package currently has no automated tests for its core processing logic and no CI pipeline that runs on code changes, meaning...
ASL Parameters Generator from DICOM/ BIDS Images
Contributor: Ibrahim Abdelazim
This project aims to develop a modular, open-source Python package and a web app built on it to automatically extract acquisition parameters from ASL...
OSIPI package – Blood-brain barrier module
Contributor: Melissa Lange
This project addresses the inverse problem of estimating physiological parameters that characterize the permeability of the blood-brain barrier (BBB)...
Unify HTML Pages For OSIPI Output
Contributor: Rohan Kumar Mahato
The OSIPI initiative has developed various open-source tools for quantitative MRI, particularly in perfusion imaging. However, the documentation for...
Flexible ASL: A Low-Code, Modular Python Library for Reproducible Arterial Spin Labeling Research
Contributor: Tongxin (Elo) Li
Arterial Spin Labeling (ASL) is a non-invasive MRI technique that measures cerebral blood flow and supports studies on Alzheimer’s disease, stroke,...
Dockerized Data Processing Pipeline for Medical Imaging
Contributor: Usman Akinyemi
This project aims to build a modular, containerized pipeline for medical image processing (e.g., IVIM analysis) with DICOM and NIfTI support. It will...
Translate different preprocessing snippets into OSIPI’s perfusion library using python
Contributor: Yifan Shuai
OSIPI TF 2.2 is committed to advancing arterial spin labeling (ASL) perfusion imaging by fostering a collaborative environment among ASL researchers,...
Automatic ‘ASL Parameters’ Generator from DICOM/ BIDS Images
Contributor: Hanliang Xu
I'll develop an automatic generator for "ASL parameters" from DICOM or nii/BIDS format images to enhance the reproducibility of scientific...
Implement a data visualization dashboard for OSIPI TF2.4
Contributor: Ahmed Basem
The current TF2.4 repository has dozens of IVIM fitting algorithms that users can select from their preferred algorithm. The project idea is to...
Setting up a framework for large-scale development
Contributor: Mohamed Nasser Hussein
Project Overview: The OSIPI framework project aims to establish a robust structure for large-scale development, focusing on best practices for...