Development of use case tutorials for Bioframe
Contributor: Talip Zengin
The BioFrame Python library is a powerful tool designed for operations and analysis of genomic intervals, enabling users to effortlessly load genomic...
Science and medicine
Open Chromosome Collective
Open-Source Tools for 3D Genomics Research
Technologies
HDF5numpypandasPythonscikit-learn
Topics
bioinformaticsdatagenomicsmachine learningpython
- Total projects
- 3
- Years participating
- 1
- Most recent
- 2024
Participation history
Historical projects
Rust-based acceleration of bioframe using polars and a new API to access assembly metadata
Contributor: Alejandro Gonzales-Irribarren
This project aims to enhance the bioframe library developed by Open2C, an organization that creates software for analyzing genomic data. A key focus...
Developing a binary pair format
Contributor: Olesia Slavska
Problem: Storing Hi-C contacts in a gzipped .tsv format, which is mainly used in pairtools, cause major slowdowns for computations and storing....