Ingesting the Canadian Common CV
Contributor: Harshit Maheshwari
The Canadian Common CV (CCV) is a tool that allows Canadian researchers to input their resume in a standardized format. It is used by multiple...
Science and medicine
Canadian Centre for Computational Genomics
Analytical solutions for Next-Generation Sequencing data
Technologies
awkJavaScriptNode.jsperlPythonRReactShell
Topics
bioinformaticsdatanext-generation sequencingsciencestatisticsvisualizationweb
- Total projects
- 15
- Years participating
- 4
- Most recent
- 2020
Participation history
Historical projects
DevOps for GenPipes
Contributor: Mohd Arshul Mansoori
DevOps for GenPipes would create an automatic deployment of the GenPipes project in the cloud using Terraform. It would support multiple cloud...
Large-scale modeling of genetic data
Contributor: Andjela Todorovic
The objective of the problem arises from the reconstruction of gene genealogies problem - from a given genotypes of sequence data from contemporary...
Development of a Long-read Nanopore RNA-seq pipeline in GenPipes
Contributor: Konstantinos Kyriakidis
The majority of contemporary genomics and transcriptomics research is carried out using short-read technology such as the output of Illumina...
Automatic update of the C3G software stack catalog
Contributor: Moonshroom
GenPipes is an important tool by C3G. GenPipes contains a suite of different software. The software contained in the suite is continuously updated...
Flowchart creator for GenPipes
Contributor: Madhav Vats
Genpipes is a set of software pipelines designed for genomic analysis. There are currently seven different pipelines and three more are in the...
MiCM Project Match
Contributor: Pranav Tharoor
The main objective of McGill initiative in Computational Medicine (MiCM) is to deliver inter-disciplinary research programs and empower the use of...
Batchtools for Compute Canada
Contributor: Konstantinos Kyriakidis
In this project we will work on the new CC systems (Beluga, Graham, Cedar, Niagara) and potentially mp2 trying to automate the setup of things like...
Human history and genome evolution project proposal
Contributor: Jiahuang Lin
There has been a recent surge in the development of open-source computational methods for simulating human evolution and analyzing human genome data....
Providing Public Accessibility for SegAnnDB
Contributor: Alan Williams
This project will expand the public accessibility of SegAnnDB as well as work on providing integrations with the UCSC Genome Browser and Galaxy.
Efficient frequency spectrum computation over large sample sizes
Contributor: Ruijian An
The goal of the summer project is to revise the current implementation so that it can compute large frequency spectra efficiently. As a result,...
Population genetics simulation and modeling using reinforcement learning
Contributor: Arjun Karuvally
The problem of population genetics can be viewed as a stochastic process. The aim of the project is to understand the reverse transition dynamics of...
Integrate structural variants calls in the tumor_pair pipeline from MUGQIC Pipeline
Contributor: Tushar Dubey
The goal of this project is to implement additional steps in the tumor_pair pipeline in order to integrate Structural Variant detection in the...
Improved Tools for Genetic Diversity Modelling
Contributor: wlong799
Interpreting genomic data largely relies on simulation software. One important family of software simulates population-level diversity over the...
Improving SegAnnDB genomic segmentation app
Contributor: abstatic
SegAnnDb (Segmentation Annotation Database) is a web app, which helps researchers analyze a chromosome profile for copy number alterations in genes....